Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 MPV17-208ENST00000405076 603 ntTSL 5 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 AC055876.2-201ENST00000531834 546 ntBASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 AP001350.2-201ENST00000625104 1094 ntBASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 CENPM-206ENST00000407253 818 ntTSL 2 BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 KRT223P-202ENST00000449164 1292 ntBASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 AC124947.2-201ENST00000547118 1133 ntBASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 COX11-210ENST00000639671 696 ntBASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
SHROOM4Q9ULL8 SLC7A15P-201ENST00000424028 1363 ntBASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 RPF1-202ENST00000370656 724 ntTSL 2 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
SHROOM4Q9ULL8 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 AC008494.3-201ENST00000606615 944 ntBASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
SHROOM4Q9ULL8 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 AL353705.2-201ENST00000428243 662 ntBASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 RASL12-203ENST00000434605 982 ntTSL 2 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 SNX29P1-201ENST00000548357 1007 ntBASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
SHROOM4Q9ULL8 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AC092933.1-201ENST00000393644 945 ntBASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 RPL28-204ENST00000431533 590 ntTSL 2 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 RPL28-206ENST00000558752 671 ntTSL 3 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AL512343.1-201ENST00000605837 169 ntBASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC31.33■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms