Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 DUX4L17-201ENST00000557360 1267 ntBASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 MTDHP5-201ENST00000598980 586 ntBASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 AC013467.2-201ENST00000605472 835 ntBASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4CQ96CF2 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
CHMP4CQ96CF2 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CHMP4CQ96CF2 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 PCDHB17P-201ENST00000539533 2393 ntBASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 MIR4469-201ENST00000583919 79 ntBASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4CQ96CF2 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 AL391256.1-201ENST00000443260 1855 ntBASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4CQ96CF2 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms