Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PDIA3P1-201ENST00000471856 1510 ntBASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 AC060834.1-201ENST00000443027 2032 ntBASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 RPSAP52-203ENST00000622976 1023 ntBASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC88AQ3V6T2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 WDR53-204ENST00000433160 887 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 CSF2RBP1-201ENST00000447905 391 ntBASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 TECR-220ENST00000600083 1204 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 AC013467.2-201ENST00000605472 835 ntBASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 AC015936.2-201ENST00000593177 259 ntBASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC88AQ3V6T2 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 NEU3-203ENST00000529024 581 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 NAA38-207ENST00000576861 556 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC88AQ3V6T2 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms