Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.61□□□□□ -0.23
LMO4P61968 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
LMO4P61968 FZD10-202ENST00000539839 3282 ntBASIC13.61□□□□□ -0.23
LMO4P61968 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.61□□□□□ -0.23
LMO4P61968 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.61□□□□□ -0.23
LMO4P61968 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.61□□□□□ -0.23
LMO4P61968 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.61□□□□□ -0.23
LMO4P61968 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.61□□□□□ -0.23
LMO4P61968 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.61□□□□□ -0.23
LMO4P61968 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
LMO4P61968 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC13.61□□□□□ -0.23
LMO4P61968 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.61□□□□□ -0.23
LMO4P61968 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
LMO4P61968 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
LMO4P61968 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.61□□□□□ -0.23
LMO4P61968 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
LMO4P61968 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LMO4P61968 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 AL031731.1-201ENST00000642131 2094 ntBASIC13.6□□□□□ -0.23
LMO4P61968 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LMO4P61968 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.6□□□□□ -0.23
LMO4P61968 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
LMO4P61968 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
LMO4P61968 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LMO4P61968 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC13.6□□□□□ -0.23
LMO4P61968 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC13.6□□□□□ -0.23
LMO4P61968 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LMO4P61968 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
LMO4P61968 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.6□□□□□ -0.23
LMO4P61968 BANF1P1-201ENST00000553684 263 ntBASIC13.6□□□□□ -0.23
LMO4P61968 AC105021.1-202ENST00000570572 669 ntBASIC13.6□□□□□ -0.23
LMO4P61968 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
LMO4P61968 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.6□□□□□ -0.23
LMO4P61968 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LMO4P61968 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
LMO4P61968 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.59□□□□□ -0.23
LMO4P61968 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.59□□□□□ -0.23
LMO4P61968 AL603756.1-201ENST00000606511 2163 ntBASIC13.59□□□□□ -0.23
LMO4P61968 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.59□□□□□ -0.23
LMO4P61968 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
LMO4P61968 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.59□□□□□ -0.23
LMO4P61968 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
LMO4P61968 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
LMO4P61968 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 AC006538.1-201ENST00000567905 1585 ntBASIC13.59□□□□□ -0.23
LMO4P61968 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LMO4P61968 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms