Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CXCL12P48061 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 KRT8P39-201ENST00000396270 1433 ntBASIC16.45■□□□□ 0.22
CXCL12P48061 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CXCL12P48061 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CXCL12P48061 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.45■□□□□ 0.22
CXCL12P48061 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.45■□□□□ 0.22
CXCL12P48061 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.45■□□□□ 0.22
CXCL12P48061 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.45■□□□□ 0.22
CXCL12P48061 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.45■□□□□ 0.22
CXCL12P48061 SPDYE17-201ENST00000412399 783 ntBASIC16.45■□□□□ 0.22
CXCL12P48061 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.45■□□□□ 0.22
CXCL12P48061 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.45■□□□□ 0.22
CXCL12P48061 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CXCL12P48061 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 AC092552.1-201ENST00000547243 906 ntBASIC16.45■□□□□ 0.22
CXCL12P48061 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.45■□□□□ 0.22
CXCL12P48061 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.45■□□□□ 0.22
CXCL12P48061 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.45■□□□□ 0.22
CXCL12P48061 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.45■□□□□ 0.22
CXCL12P48061 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CXCL12P48061 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL12P48061 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CXCL12P48061 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.44■□□□□ 0.22
CXCL12P48061 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CXCL12P48061 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
CXCL12P48061 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.44■□□□□ 0.22
CXCL12P48061 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.44■□□□□ 0.22
CXCL12P48061 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.44■□□□□ 0.22
CXCL12P48061 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.44■□□□□ 0.22
CXCL12P48061 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.44■□□□□ 0.22
CXCL12P48061 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CXCL12P48061 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CXCL12P48061 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.44■□□□□ 0.22
CXCL12P48061 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.44■□□□□ 0.22
CXCL12P48061 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.44■□□□□ 0.22
CXCL12P48061 FAM8A2P-201ENST00000528813 1142 ntBASIC16.44■□□□□ 0.22
CXCL12P48061 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.44■□□□□ 0.22
CXCL12P48061 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.44■□□□□ 0.22
CXCL12P48061 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.44■□□□□ 0.22
CXCL12P48061 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CXCL12P48061 MIR6775-201ENST00000617557 69 ntBASIC16.44■□□□□ 0.22
CXCL12P48061 AL109936.8-201ENST00000641772 604 ntBASIC16.44■□□□□ 0.22
CXCL12P48061 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CXCL12P48061 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.44■□□□□ 0.22
CXCL12P48061 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.44■□□□□ 0.22
CXCL12P48061 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CXCL12P48061 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
CXCL12P48061 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL12P48061 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CXCL12P48061 REXO1L6P-201ENST00000603433 1515 ntBASIC16.44■□□□□ 0.22
CXCL12P48061 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
CXCL12P48061 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CXCL12P48061 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.43■□□□□ 0.22
CXCL12P48061 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.43■□□□□ 0.22
CXCL12P48061 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
CXCL12P48061 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
CXCL12P48061 BOLA2P3-201ENST00000404566 256 ntBASIC16.43■□□□□ 0.22
CXCL12P48061 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.43■□□□□ 0.22
CXCL12P48061 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms