Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.35■□□□□ 0.69
SCN4AP35499 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SCN4AP35499 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SCN4AP35499 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
SCN4AP35499 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SCN4AP35499 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 AC026954.1-201ENST00000429771 1293 ntBASIC19.35■□□□□ 0.69
SCN4AP35499 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 ACTG1P17-201ENST00000558391 1119 ntBASIC19.35■□□□□ 0.69
SCN4AP35499 AC105129.2-201ENST00000559536 390 ntBASIC19.35■□□□□ 0.69
SCN4AP35499 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.35■□□□□ 0.69
SCN4AP35499 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
SCN4AP35499 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.35■□□□□ 0.69
SCN4AP35499 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN4AP35499 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN4AP35499 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 CYP4F24P-201ENST00000586049 1580 ntBASIC19.34■□□□□ 0.69
SCN4AP35499 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SCN4AP35499 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
SCN4AP35499 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.34■□□□□ 0.69
SCN4AP35499 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.34■□□□□ 0.69
SCN4AP35499 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.34■□□□□ 0.69
SCN4AP35499 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN4AP35499 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN4AP35499 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN4AP35499 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC19.33■□□□□ 0.69
SCN4AP35499 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SCN4AP35499 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.33■□□□□ 0.69
SCN4AP35499 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SCN4AP35499 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SCN4AP35499 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN4AP35499 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.33■□□□□ 0.69
SCN4AP35499 AC106760.1-201ENST00000508690 800 ntBASIC19.33■□□□□ 0.69
SCN4AP35499 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.33■□□□□ 0.69
SCN4AP35499 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.33■□□□□ 0.69
SCN4AP35499 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SCN4AP35499 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.33■□□□□ 0.69
SCN4AP35499 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN4AP35499 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SCN4AP35499 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.33■□□□□ 0.69
SCN4AP35499 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN4AP35499 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN4AP35499 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SCN4AP35499 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN4AP35499 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN4AP35499 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SCN4AP35499 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
SCN4AP35499 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SCN4AP35499 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 MIR326-201ENST00000362220 95 ntBASIC19.32■□□□□ 0.68
SCN4AP35499 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 AL359711.2-201ENST00000563105 872 ntBASIC19.32■□□□□ 0.68
SCN4AP35499 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.32■□□□□ 0.68
SCN4AP35499 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.32■□□□□ 0.68
SCN4AP35499 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SCN4AP35499 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SCN4AP35499 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
SCN4AP35499 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SCN4AP35499 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.32■□□□□ 0.68
SCN4AP35499 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 AC091804.1-201ENST00000486888 567 ntBASIC19.32■□□□□ 0.68
SCN4AP35499 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.32■□□□□ 0.68
SCN4AP35499 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.32■□□□□ 0.68
SCN4AP35499 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms