Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 EGFEM1P-202ENST00000431685 1563 ntBASIC16.43■□□□□ 0.22
CDH3P22223 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
CDH3P22223 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH3P22223 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH3P22223 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDH3P22223 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.42■□□□□ 0.22
CDH3P22223 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CDH3P22223 MTDHP5-201ENST00000598980 586 ntBASIC16.42■□□□□ 0.22
CDH3P22223 AC006538.3-201ENST00000612495 578 ntBASIC16.42■□□□□ 0.22
CDH3P22223 AC007064.4-201ENST00000637740 555 ntBASIC16.42■□□□□ 0.22
CDH3P22223 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDH3P22223 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 AC105020.1-201ENST00000435356 2205 ntBASIC16.42■□□□□ 0.22
CDH3P22223 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH3P22223 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH3P22223 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH3P22223 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH3P22223 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH3P22223 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH3P22223 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH3P22223 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH3P22223 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH3P22223 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CDH3P22223 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH3P22223 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CDH3P22223 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CDH3P22223 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH3P22223 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.41■□□□□ 0.22
CDH3P22223 SLC25A6P2-201ENST00000497974 877 ntBASIC16.41■□□□□ 0.22
CDH3P22223 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH3P22223 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH3P22223 AC004877.2-201ENST00000623941 599 ntBASIC16.41■□□□□ 0.22
CDH3P22223 AC092865.6-201ENST00000642101 219 ntBASIC16.41■□□□□ 0.22
CDH3P22223 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CDH3P22223 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH3P22223 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH3P22223 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CDH3P22223 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 AC005052.1-201ENST00000625181 2492 ntBASIC16.41■□□□□ 0.22
CDH3P22223 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH3P22223 AC129492.6-201ENST00000611383 1305 ntBASIC16.41■□□□□ 0.22
CDH3P22223 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH3P22223 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
CDH3P22223 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH3P22223 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH3P22223 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH3P22223 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CDH3P22223 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 UPF3AP3-201ENST00000420996 769 ntBASIC16.4■□□□□ 0.22
CDH3P22223 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH3P22223 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH3P22223 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH3P22223 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH3P22223 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 AC023141.13-201ENST00000604991 943 ntBASIC16.4■□□□□ 0.22
CDH3P22223 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms