Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 ACA64.2-201ENST00000459014 129 ntBASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 AC022494.1-201ENST00000466044 728 ntBASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 CD81-207ENST00000481687 890 ntTSL 2 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 RAB35-202ENST00000534951 939 ntTSL 2 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 AL162274.1-201ENST00000617191 1098 ntBASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CSB-PGBD3P0DP91 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 MIR1909-201ENST00000411312 80 ntBASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 FHL2-212ENST00000607522 759 ntTSL 2 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CSB-PGBD3P0DP91 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSB-PGBD3P0DP91 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 AL023806.1-201ENST00000603994 1649 ntBASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CSB-PGBD3P0DP91 AC112492.5-201ENST00000421897 457 ntBASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms