Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 AC046158.3-201ENST00000624947 2558 ntBASIC16.41■□□□□ 0.22
VPS4BO75351 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS4BO75351 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS4BO75351 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS4BO75351 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 INTS4P1-201ENST00000438455 1935 ntBASIC16.41■□□□□ 0.22
VPS4BO75351 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
VPS4BO75351 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 YBX2P1-201ENST00000394192 760 ntBASIC16.41■□□□□ 0.22
VPS4BO75351 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS4BO75351 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS4BO75351 AC112482.1-201ENST00000492080 688 ntBASIC16.41■□□□□ 0.22
VPS4BO75351 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS4BO75351 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS4BO75351 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS4BO75351 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS4BO75351 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS4BO75351 AL139011.1-202ENST00000642063 584 ntBASIC16.41■□□□□ 0.22
VPS4BO75351 MTHFR-217ENST00000641820 1569 ntBASIC16.41■□□□□ 0.22
VPS4BO75351 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS4BO75351 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS4BO75351 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS4BO75351 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS4BO75351 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS4BO75351 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
VPS4BO75351 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS4BO75351 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.41■□□□□ 0.22
VPS4BO75351 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS4BO75351 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS4BO75351 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 AP002414.1-201ENST00000391405 1147 ntBASIC16.4■□□□□ 0.22
VPS4BO75351 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
VPS4BO75351 RNA5SP416-201ENST00000516838 111 ntBASIC16.4■□□□□ 0.22
VPS4BO75351 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS4BO75351 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
VPS4BO75351 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
VPS4BO75351 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VPS4BO75351 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms