Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 AL118508.1-201ENST00000613502 2345 ntBASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 OR6D1P-203ENST00000641209 4860 ntBASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 PMS2P7-201ENST00000506558 1336 ntBASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS54Q9P1Q0 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
VPS54Q9P1Q0 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 PCDH8P1-201ENST00000428983 2773 ntBASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 AC140658.5-201ENST00000438532 169 ntBASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 AC040169.1-201ENST00000565382 521 ntBASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 AL009183.1-201ENST00000603760 355 ntBASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 AC068137.2-201ENST00000605408 478 ntBASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 GGT3P-204ENST00000453783 1664 ntBASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS54Q9P1Q0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms