Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 LINC00895-201ENST00000629028 1637 ntBASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 AC084018.2-201ENST00000613093 2607 ntBASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 AC002310.6-201ENST00000624451 1377 ntBASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4CQ96CF2 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 HTR5BP-201ENST00000430851 1154 ntBASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 AC134684.3-201ENST00000641758 218 ntBASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 AL139011.1-202ENST00000642063 584 ntBASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4CQ96CF2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 AC096734.2-201ENST00000562054 433 ntBASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 ACTL9-202ENST00000612068 1252 ntBASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 AC078925.2-201ENST00000624013 1973 ntBASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4CQ96CF2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms