Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 AL138918.1-201ENST00000568306 659 ntBASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 AP000842.3-202ENST00000569238 1080 ntBASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 AC084121.4-201ENST00000641598 221 ntBASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 AF228730.8-201ENST00000642140 221 ntBASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 FO538757.1-201ENST00000623083 1397 ntBASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 AL023806.1-201ENST00000603994 1649 ntBASIC16.74■□□□□ 0.27
HDDC3Q8N4P3 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 TREML5P-201ENST00000421694 576 ntBASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 KRT18P34-201ENST00000488218 1270 ntBASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 LINC00895-201ENST00000629028 1637 ntBASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDDC3Q8N4P3 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 SPDYE14P-201ENST00000442619 822 ntBASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDDC3Q8N4P3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms