Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
PRKDCP78527 ENPP7P5-201ENST00000541031 1031 ntBASIC11.83□□□□□ -0.52
PRKDCP78527 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC11.83□□□□□ -0.52
PRKDCP78527 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC11.83□□□□□ -0.52
PRKDCP78527 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC11.83□□□□□ -0.52
PRKDCP78527 AF254983.2-201ENST00000612331 135 ntBASIC11.83□□□□□ -0.52
PRKDCP78527 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PRKDCP78527 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
PRKDCP78527 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC11.83□□□□□ -0.52
PRKDCP78527 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC11.82□□□□□ -0.52
PRKDCP78527 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC11.82□□□□□ -0.52
PRKDCP78527 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 PTK7-212ENST00000476760 902 ntTSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 AC138951.2-201ENST00000623455 1161 ntBASIC11.82□□□□□ -0.52
PRKDCP78527 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 RNA5SP410-201ENST00000516285 106 ntBASIC11.82□□□□□ -0.52
PRKDCP78527 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 AL096828.3-201ENST00000615354 462 ntBASIC11.82□□□□□ -0.52
PRKDCP78527 AC079336.7-201ENST00000623428 1078 ntBASIC11.82□□□□□ -0.52
PRKDCP78527 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
PRKDCP78527 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC11.82□□□□□ -0.52
PRKDCP78527 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 RN7SL574P-201ENST00000581512 297 ntBASIC11.82□□□□□ -0.52
PRKDCP78527 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC11.82□□□□□ -0.52
PRKDCP78527 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC11.82□□□□□ -0.52
PRKDCP78527 HADH-212ENST00000638621 741 ntTSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC11.82□□□□□ -0.52
PRKDCP78527 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
PRKDCP78527 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
PRKDCP78527 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
PRKDCP78527 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC11.81□□□□□ -0.52
PRKDCP78527 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 AC106760.1-201ENST00000508690 800 ntBASIC11.81□□□□□ -0.52
PRKDCP78527 AC141586.1-203ENST00000567242 366 ntBASIC11.81□□□□□ -0.52
PRKDCP78527 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.81□□□□□ -0.52
PRKDCP78527 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
PRKDCP78527 MIR1227-201ENST00000408484 88 ntBASIC11.81□□□□□ -0.52
PRKDCP78527 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC11.81□□□□□ -0.52
PRKDCP78527 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
PRKDCP78527 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC11.81□□□□□ -0.52
PRKDCP78527 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms