Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.93■□□□□ 0.78
BRCA1P38398 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.93■□□□□ 0.78
BRCA1P38398 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
BRCA1P38398 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.93■□□□□ 0.78
BRCA1P38398 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.93■□□□□ 0.78
BRCA1P38398 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 AC026954.1-201ENST00000429771 1293 ntBASIC19.92■□□□□ 0.78
BRCA1P38398 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.92■□□□□ 0.78
BRCA1P38398 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.92■□□□□ 0.78
BRCA1P38398 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.92■□□□□ 0.78
BRCA1P38398 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
BRCA1P38398 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.92■□□□□ 0.78
BRCA1P38398 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
BRCA1P38398 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.92■□□□□ 0.78
BRCA1P38398 ABALON-201ENST00000629058 1903 ntBASIC19.92■□□□□ 0.78
BRCA1P38398 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
BRCA1P38398 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.92■□□□□ 0.78
BRCA1P38398 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.92■□□□□ 0.78
BRCA1P38398 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.92■□□□□ 0.78
BRCA1P38398 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC19.92■□□□□ 0.78
BRCA1P38398 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.92■□□□□ 0.78
BRCA1P38398 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.92■□□□□ 0.78
BRCA1P38398 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.92■□□□□ 0.78
BRCA1P38398 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.92■□□□□ 0.78
BRCA1P38398 AC020765.3-201ENST00000613051 740 ntBASIC19.92■□□□□ 0.78
BRCA1P38398 AC005695.3-201ENST00000614522 232 ntBASIC19.92■□□□□ 0.78
BRCA1P38398 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRCA1P38398 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRCA1P38398 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.91■□□□□ 0.78
BRCA1P38398 AP000974.1-201ENST00000623909 2387 ntBASIC19.91■□□□□ 0.78
BRCA1P38398 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRCA1P38398 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
BRCA1P38398 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.91■□□□□ 0.78
BRCA1P38398 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BRCA1P38398 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.91■□□□□ 0.78
BRCA1P38398 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
BRCA1P38398 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.91■□□□□ 0.78
BRCA1P38398 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BRCA1P38398 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC19.91■□□□□ 0.78
BRCA1P38398 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.91■□□□□ 0.78
BRCA1P38398 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC19.91■□□□□ 0.78
BRCA1P38398 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.91■□□□□ 0.78
BRCA1P38398 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.91■□□□□ 0.78
BRCA1P38398 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.91■□□□□ 0.78
BRCA1P38398 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.91■□□□□ 0.78
BRCA1P38398 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
BRCA1P38398 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BRCA1P38398 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRCA1P38398 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.91■□□□□ 0.78
BRCA1P38398 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRCA1P38398 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BRCA1P38398 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
BRCA1P38398 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.9■□□□□ 0.78
BRCA1P38398 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
BRCA1P38398 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.9■□□□□ 0.78
BRCA1P38398 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
BRCA1P38398 SOCS2P1-201ENST00000417727 557 ntBASIC19.9■□□□□ 0.78
BRCA1P38398 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.9■□□□□ 0.78
BRCA1P38398 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.9■□□□□ 0.78
BRCA1P38398 AP001889.1-201ENST00000525414 633 ntBASIC19.9■□□□□ 0.78
BRCA1P38398 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.9■□□□□ 0.78
BRCA1P38398 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC19.9■□□□□ 0.78
BRCA1P38398 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.9■□□□□ 0.78
BRCA1P38398 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
BRCA1P38398 AC015967.2-201ENST00000624092 234 ntBASIC19.9■□□□□ 0.78
BRCA1P38398 AC006435.4-201ENST00000625037 234 ntBASIC19.9■□□□□ 0.78
BRCA1P38398 AL356737.1-201ENST00000634391 234 ntBASIC19.9■□□□□ 0.78
BRCA1P38398 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.9■□□□□ 0.78
BRCA1P38398 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
BRCA1P38398 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
BRCA1P38398 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms