Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.67■□□□□ 0.9
COL5A3P25940 RARRES2P5-201ENST00000564013 466 ntBASIC20.67■□□□□ 0.9
COL5A3P25940 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL5A3P25940 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC20.67■□□□□ 0.9
COL5A3P25940 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A3P25940 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.67■□□□□ 0.9
COL5A3P25940 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A3P25940 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A3P25940 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.67■□□□□ 0.9
COL5A3P25940 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL5A3P25940 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A3P25940 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A3P25940 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
COL5A3P25940 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.67■□□□□ 0.9
COL5A3P25940 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 AC104989.1-201ENST00000519711 778 ntBASIC20.67■□□□□ 0.9
COL5A3P25940 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC20.67■□□□□ 0.9
COL5A3P25940 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.67■□□□□ 0.9
COL5A3P25940 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
COL5A3P25940 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC20.67■□□□□ 0.9
COL5A3P25940 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
COL5A3P25940 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC20.67■□□□□ 0.9
COL5A3P25940 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A3P25940 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.67■□□□□ 0.9
COL5A3P25940 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC20.66■□□□□ 0.9
COL5A3P25940 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
COL5A3P25940 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.66■□□□□ 0.9
COL5A3P25940 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.66■□□□□ 0.9
COL5A3P25940 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC20.66■□□□□ 0.9
COL5A3P25940 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.66■□□□□ 0.9
COL5A3P25940 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC20.66■□□□□ 0.9
COL5A3P25940 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC20.66■□□□□ 0.9
COL5A3P25940 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC20.66■□□□□ 0.9
COL5A3P25940 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC20.66■□□□□ 0.9
COL5A3P25940 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COL5A3P25940 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.66■□□□□ 0.9
COL5A3P25940 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20.66■□□□□ 0.9
COL5A3P25940 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.66■□□□□ 0.9
COL5A3P25940 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC20.66■□□□□ 0.9
COL5A3P25940 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL5A3P25940 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL5A3P25940 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
COL5A3P25940 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 PP12613-201ENST00000424958 2230 ntBASIC20.66■□□□□ 0.9
COL5A3P25940 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.66■□□□□ 0.9
COL5A3P25940 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A3P25940 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A3P25940 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
COL5A3P25940 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.65■□□□□ 0.9
COL5A3P25940 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A3P25940 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A3P25940 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL5A3P25940 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A3P25940 NSL1-201ENST00000366976 722 ntTSL 2 BASIC20.65■□□□□ 0.9
COL5A3P25940 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC20.65■□□□□ 0.9
COL5A3P25940 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC20.65■□□□□ 0.9
COL5A3P25940 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20.65■□□□□ 0.9
COL5A3P25940 AL365330.1-201ENST00000607459 531 ntBASIC20.65■□□□□ 0.9
COL5A3P25940 AC133552.6-201ENST00000613406 534 ntBASIC20.65■□□□□ 0.9
COL5A3P25940 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A3P25940 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A3P25940 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL5A3P25940 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A3P25940 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL5A3P25940 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
COL5A3P25940 CDC14C-201ENST00000428251 1719 ntBASIC20.65■□□□□ 0.9
COL5A3P25940 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
COL5A3P25940 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC20.64■□□□□ 0.9
COL5A3P25940 AL162726.2-201ENST00000438986 1017 ntBASIC20.64■□□□□ 0.9
COL5A3P25940 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
COL5A3P25940 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.64■□□□□ 0.9
COL5A3P25940 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC20.64■□□□□ 0.9
COL5A3P25940 BRI3BPP1-201ENST00000594224 787 ntBASIC20.64■□□□□ 0.9
COL5A3P25940 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
COL5A3P25940 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL5A3P25940 PCGF3-213ENST00000620529 1899 ntBASIC20.64■□□□□ 0.9
COL5A3P25940 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A3P25940 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A3P25940 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A3P25940 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.64■□□□□ 0.89
COL5A3P25940 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A3P25940 PDIA3P1-201ENST00000471856 1510 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms