Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.15■□□□□ 0.02
FREM3P0C091 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.15■□□□□ 0.02
FREM3P0C091 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.15■□□□□ 0.02
FREM3P0C091 AC105339.1-204ENST00000636249 355 ntBASIC15.15■□□□□ 0.02
FREM3P0C091 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
FREM3P0C091 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.15■□□□□ 0.02
FREM3P0C091 KRT8P49-201ENST00000604166 1432 ntBASIC15.15■□□□□ 0.02
FREM3P0C091 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.15■□□□□ 0.02
FREM3P0C091 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.15■□□□□ 0.02
FREM3P0C091 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.15■□□□□ 0.02
FREM3P0C091 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.15■□□□□ 0.02
FREM3P0C091 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.15■□□□□ 0.02
FREM3P0C091 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 BCL2-203ENST00000589955 5011 ntBASIC15.15■□□□□ 0.02
FREM3P0C091 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.15■□□□□ 0.02
FREM3P0C091 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FREM3P0C091 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.15■□□□□ 0.02
FREM3P0C091 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.14■□□□□ 0.01
FREM3P0C091 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
FREM3P0C091 AC243562.1-201ENST00000560672 389 ntBASIC15.14■□□□□ 0.01
FREM3P0C091 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.14■□□□□ 0.01
FREM3P0C091 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.14■□□□□ 0.01
FREM3P0C091 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
FREM3P0C091 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
FREM3P0C091 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
FREM3P0C091 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
FREM3P0C091 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.14■□□□□ 0.01
FREM3P0C091 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
FREM3P0C091 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.14■□□□□ 0.01
FREM3P0C091 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.14■□□□□ 0.01
FREM3P0C091 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.14■□□□□ 0.01
FREM3P0C091 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.14■□□□□ 0.01
FREM3P0C091 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.14■□□□□ 0.01
FREM3P0C091 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
FREM3P0C091 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.14■□□□□ 0.01
FREM3P0C091 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FREM3P0C091 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
FREM3P0C091 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.13■□□□□ 0.01
FREM3P0C091 AL592309.1-201ENST00000443127 649 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 AC092183.1-201ENST00000469884 875 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.13■□□□□ 0.01
FREM3P0C091 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.13■□□□□ 0.01
FREM3P0C091 AC087641.1-201ENST00000557561 1021 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 RARRES2P8-201ENST00000566335 367 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 AC091167.2-201ENST00000579581 588 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
FREM3P0C091 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.13■□□□□ 0.01
FREM3P0C091 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.13■□□□□ 0.01
FREM3P0C091 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 PCDH8P1-201ENST00000428983 2773 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 AL118508.1-201ENST00000613502 2345 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms