Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 SPTLC1P1-201ENST00000447199 261 ntBASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 CU639417.3-201ENST00000624240 1404 ntBASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 RNU1-129P-201ENST00000384064 167 ntBASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 AC132872.1-201ENST00000566986 1195 ntBASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 U1.21-201ENST00000580816 167 ntBASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 AC018529.1-201ENST00000613063 361 ntBASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 FLJ13224-201ENST00000313737 1514 ntBASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMD1Q9UGP4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 AL031055.1-201ENST00000606362 631 ntBASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMD1Q9UGP4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms