Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 RNU1-129P-201ENST00000384064 167 ntBASIC17.91■□□□□ 0.46
SIX2Q9NPC8 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.91■□□□□ 0.46
SIX2Q9NPC8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.91■□□□□ 0.46
SIX2Q9NPC8 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 U1.21-201ENST00000580816 167 ntBASIC17.91■□□□□ 0.46
SIX2Q9NPC8 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 LINC01144-201ENST00000626198 1710 ntBASIC17.91■□□□□ 0.46
SIX2Q9NPC8 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX2Q9NPC8 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX2Q9NPC8 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
SIX2Q9NPC8 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
SIX2Q9NPC8 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SIX2Q9NPC8 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.89■□□□□ 0.46
SIX2Q9NPC8 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
SIX2Q9NPC8 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 REXO1L8P-201ENST00000604378 1897 ntBASIC17.89■□□□□ 0.45
SIX2Q9NPC8 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 AC010507.1-201ENST00000633895 436 ntBASIC17.89■□□□□ 0.45
SIX2Q9NPC8 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 AC006449.6-201ENST00000612330 2296 ntBASIC17.89■□□□□ 0.45
SIX2Q9NPC8 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms