Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
UBQLN3Q9H347 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
UBQLN3Q9H347 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.53■□□□□ 0.08
UBQLN3Q9H347 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.53■□□□□ 0.08
UBQLN3Q9H347 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
UBQLN3Q9H347 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 AC006449.5-201ENST00000610658 2098 ntBASIC15.52■□□□□ 0.08
UBQLN3Q9H347 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 BX842568.4-201ENST00000421222 227 ntBASIC15.52■□□□□ 0.08
UBQLN3Q9H347 AC004832.2-201ENST00000426397 482 ntBASIC15.52■□□□□ 0.08
UBQLN3Q9H347 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.52■□□□□ 0.08
UBQLN3Q9H347 AC096734.2-201ENST00000562054 433 ntBASIC15.52■□□□□ 0.08
UBQLN3Q9H347 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
UBQLN3Q9H347 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AL139384.1-201ENST00000612143 3047 ntBASIC15.51■□□□□ 0.07
UBQLN3Q9H347 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 SLC25A6P2-201ENST00000497974 877 ntBASIC15.51■□□□□ 0.07
UBQLN3Q9H347 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AC002347.1-201ENST00000569543 541 ntBASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AC010507.1-201ENST00000633895 436 ntBASIC15.51■□□□□ 0.07
UBQLN3Q9H347 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 PCDHB17P-201ENST00000539533 2393 ntBASIC15.51■□□□□ 0.07
UBQLN3Q9H347 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.51■□□□□ 0.07
UBQLN3Q9H347 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.5■□□□□ 0.07
UBQLN3Q9H347 KRT18P13-201ENST00000400056 1290 ntBASIC15.5■□□□□ 0.07
UBQLN3Q9H347 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms