Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AP002490.2-201ENST00000524791 560 ntBASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 MIR4492-201ENST00000581627 80 ntBASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AL671710.1-201ENST00000610245 2349 ntBASIC20.2■□□□□ 0.82
VPS53Q5VIR6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.19■□□□□ 0.82
VPS53Q5VIR6 AL591424.1-201ENST00000442569 1213 ntBASIC20.19■□□□□ 0.82
VPS53Q5VIR6 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 AC004877.2-201ENST00000623941 599 ntBASIC20.19■□□□□ 0.82
VPS53Q5VIR6 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS53Q5VIR6 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 AC023274.1-201ENST00000418278 595 ntBASIC20.18■□□□□ 0.82
VPS53Q5VIR6 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 SNX33P1-201ENST00000592116 1762 ntBASIC20.18■□□□□ 0.82
VPS53Q5VIR6 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 AL391256.1-201ENST00000443260 1855 ntBASIC20.18■□□□□ 0.82
VPS53Q5VIR6 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VPS53Q5VIR6 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 AC131009.4-201ENST00000624048 1740 ntBASIC20.17■□□□□ 0.82
VPS53Q5VIR6 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms