Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 KLF2P4-201ENST00000451959 1225 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 AC116353.5-201ENST00000638148 1699 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 BCRP2-202ENST00000447763 634 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 BCRP6-201ENST00000510112 632 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 BCRP7-201ENST00000511549 544 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 MSTO2P-201ENST00000314835 1709 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 AC092506.1-202ENST00000401022 528 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 CALR4P-201ENST00000431943 946 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 RPL13AP20-201ENST00000459725 609 ntBASIC17.42■□□□□ 0.38
CHD9Q3L8U1 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.42■□□□□ 0.38
CHD9Q3L8U1 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 IGHJ2P-201ENST00000454480 60 ntBASIC17.41■□□□□ 0.38
CHD9Q3L8U1 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 AC009542.2-202ENST00000619004 1067 ntBASIC17.41■□□□□ 0.38
CHD9Q3L8U1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.41■□□□□ 0.38
CHD9Q3L8U1 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 AL138781.2-201ENST00000617896 1843 ntBASIC17.4■□□□□ 0.38
CHD9Q3L8U1 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms