Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.48■□□□□ 0.23
PKNOX1P55347 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PKNOX1P55347 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.48■□□□□ 0.23
PKNOX1P55347 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 TERC-201ENST00000602385 541 ntBASIC16.48■□□□□ 0.23
PKNOX1P55347 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
PKNOX1P55347 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.48■□□□□ 0.23
PKNOX1P55347 AL513477.1-201ENST00000602865 2407 ntBASIC16.48■□□□□ 0.23
PKNOX1P55347 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.48■□□□□ 0.23
PKNOX1P55347 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.48■□□□□ 0.23
PKNOX1P55347 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PKNOX1P55347 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
PKNOX1P55347 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PKNOX1P55347 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PKNOX1P55347 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PKNOX1P55347 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.47■□□□□ 0.23
PKNOX1P55347 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
PKNOX1P55347 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.47■□□□□ 0.23
PKNOX1P55347 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PKNOX1P55347 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PKNOX1P55347 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.47■□□□□ 0.23
PKNOX1P55347 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.47■□□□□ 0.23
PKNOX1P55347 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 AC243591.1-201ENST00000452967 1364 ntBASIC16.47■□□□□ 0.23
PKNOX1P55347 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.47■□□□□ 0.23
PKNOX1P55347 ALOX12P2-203ENST00000570921 1945 ntBASIC16.47■□□□□ 0.23
PKNOX1P55347 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PKNOX1P55347 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.46■□□□□ 0.23
PKNOX1P55347 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.46■□□□□ 0.23
PKNOX1P55347 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.46■□□□□ 0.23
PKNOX1P55347 NCF1C-201ENST00000438382 1427 ntBASIC16.46■□□□□ 0.23
PKNOX1P55347 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.46■□□□□ 0.23
PKNOX1P55347 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.46■□□□□ 0.23
PKNOX1P55347 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.46■□□□□ 0.23
PKNOX1P55347 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PKNOX1P55347 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.46■□□□□ 0.23
PKNOX1P55347 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.23
PKNOX1P55347 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.46■□□□□ 0.23
PKNOX1P55347 AC013467.2-201ENST00000605472 835 ntBASIC16.46■□□□□ 0.23
PKNOX1P55347 AP001269.4-201ENST00000609611 512 ntBASIC16.46■□□□□ 0.23
PKNOX1P55347 AL139011.1-202ENST00000642063 584 ntBASIC16.46■□□□□ 0.23
PKNOX1P55347 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.46■□□□□ 0.23
PKNOX1P55347 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
PKNOX1P55347 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.46■□□□□ 0.23
PKNOX1P55347 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.46■□□□□ 0.23
PKNOX1P55347 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.46■□□□□ 0.23
PKNOX1P55347 AC006538.1-201ENST00000567905 1585 ntBASIC16.46■□□□□ 0.23
PKNOX1P55347 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PKNOX1P55347 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.22
PKNOX1P55347 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
PKNOX1P55347 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms