Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.79■□□□□ 0.6
CIITAP33076 RPS8P6-201ENST00000426177 609 ntBASIC18.79■□□□□ 0.6
CIITAP33076 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.79■□□□□ 0.6
CIITAP33076 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.79■□□□□ 0.6
CIITAP33076 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.79■□□□□ 0.6
CIITAP33076 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.79■□□□□ 0.6
CIITAP33076 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 KRT8P23-201ENST00000560090 1207 ntBASIC18.79■□□□□ 0.6
CIITAP33076 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.79■□□□□ 0.6
CIITAP33076 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.79■□□□□ 0.6
CIITAP33076 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CIITAP33076 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 AC073389.1-201ENST00000595595 795 ntBASIC18.79■□□□□ 0.6
CIITAP33076 AC004835.2-201ENST00000603762 682 ntBASIC18.79■□□□□ 0.6
CIITAP33076 AC008267.7-201ENST00000624570 1194 ntBASIC18.79■□□□□ 0.6
CIITAP33076 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.79■□□□□ 0.6
CIITAP33076 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CIITAP33076 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CIITAP33076 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CIITAP33076 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.78■□□□□ 0.6
CIITAP33076 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.78■□□□□ 0.6
CIITAP33076 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.78■□□□□ 0.6
CIITAP33076 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.78■□□□□ 0.6
CIITAP33076 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CIITAP33076 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CIITAP33076 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.78■□□□□ 0.6
CIITAP33076 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.78■□□□□ 0.6
CIITAP33076 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.78■□□□□ 0.6
CIITAP33076 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.78■□□□□ 0.6
CIITAP33076 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.78■□□□□ 0.6
CIITAP33076 AC093520.2-201ENST00000561830 333 ntBASIC18.78■□□□□ 0.6
CIITAP33076 SNHG9-202ENST00000564014 471 ntBASIC18.78■□□□□ 0.6
CIITAP33076 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.78■□□□□ 0.6
CIITAP33076 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.78■□□□□ 0.6
CIITAP33076 AL596442.2-201ENST00000610240 980 ntBASIC18.78■□□□□ 0.6
CIITAP33076 AC020765.3-201ENST00000613051 740 ntBASIC18.78■□□□□ 0.6
CIITAP33076 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CIITAP33076 GGT3P-204ENST00000453783 1664 ntBASIC18.78■□□□□ 0.6
CIITAP33076 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.78■□□□□ 0.6
CIITAP33076 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CIITAP33076 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CIITAP33076 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CIITAP33076 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CIITAP33076 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CIITAP33076 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CIITAP33076 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CIITAP33076 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CIITAP33076 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CIITAP33076 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CIITAP33076 FLJ38576-201ENST00000623820 2459 ntBASIC18.77■□□□□ 0.6
CIITAP33076 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CIITAP33076 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.77■□□□□ 0.6
CIITAP33076 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CIITAP33076 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CIITAP33076 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.77■□□□□ 0.6
CIITAP33076 MIR346-201ENST00000362234 95 ntBASIC18.77■□□□□ 0.6
CIITAP33076 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.77■□□□□ 0.6
CIITAP33076 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CIITAP33076 AL592309.1-201ENST00000443127 649 ntBASIC18.77■□□□□ 0.6
CIITAP33076 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.77■□□□□ 0.6
CIITAP33076 AC069335.1-201ENST00000489972 472 ntBASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms