Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL9A1P20849 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC17.08■□□□□ 0.32
COL9A1P20849 AC006033.1-201ENST00000440505 426 ntBASIC17.08■□□□□ 0.32
COL9A1P20849 HNRNPA1P23-201ENST00000491091 1133 ntBASIC17.08■□□□□ 0.32
COL9A1P20849 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.08■□□□□ 0.32
COL9A1P20849 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.08■□□□□ 0.32
COL9A1P20849 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.08■□□□□ 0.32
COL9A1P20849 AC027307.2-201ENST00000591252 911 ntBASIC17.08■□□□□ 0.32
COL9A1P20849 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
COL9A1P20849 AC026790.2-201ENST00000606282 430 ntBASIC17.08■□□□□ 0.32
COL9A1P20849 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.08■□□□□ 0.32
COL9A1P20849 AC007967.4-201ENST00000614700 386 ntBASIC17.08■□□□□ 0.32
COL9A1P20849 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC17.08■□□□□ 0.32
COL9A1P20849 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.08■□□□□ 0.32
COL9A1P20849 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC17.08■□□□□ 0.32
COL9A1P20849 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL9A1P20849 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL9A1P20849 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL9A1P20849 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
COL9A1P20849 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.07■□□□□ 0.32
COL9A1P20849 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
COL9A1P20849 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
COL9A1P20849 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.07■□□□□ 0.32
COL9A1P20849 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.07■□□□□ 0.32
COL9A1P20849 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL9A1P20849 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL9A1P20849 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL9A1P20849 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.07■□□□□ 0.32
COL9A1P20849 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.07■□□□□ 0.32
COL9A1P20849 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.07■□□□□ 0.32
COL9A1P20849 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
COL9A1P20849 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.07■□□□□ 0.32
COL9A1P20849 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.07■□□□□ 0.32
COL9A1P20849 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL9A1P20849 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL9A1P20849 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.06■□□□□ 0.32
COL9A1P20849 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.06■□□□□ 0.32
COL9A1P20849 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.06■□□□□ 0.32
COL9A1P20849 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 SLC25A1P3-201ENST00000395415 828 ntBASIC17.06■□□□□ 0.32
COL9A1P20849 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.06■□□□□ 0.32
COL9A1P20849 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.06■□□□□ 0.32
COL9A1P20849 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.06■□□□□ 0.32
COL9A1P20849 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.06■□□□□ 0.32
COL9A1P20849 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
COL9A1P20849 ELK1P1-201ENST00000485699 580 ntBASIC17.06■□□□□ 0.32
COL9A1P20849 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC17.06■□□□□ 0.32
COL9A1P20849 AC055876.2-201ENST00000531834 546 ntBASIC17.06■□□□□ 0.32
COL9A1P20849 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
COL9A1P20849 MIR3908-201ENST00000579798 126 ntBASIC17.06■□□□□ 0.32
COL9A1P20849 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.06■□□□□ 0.32
COL9A1P20849 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL9A1P20849 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL9A1P20849 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.06■□□□□ 0.32
COL9A1P20849 BTBD7P1-201ENST00000447253 1453 ntBASIC17.05■□□□□ 0.32
COL9A1P20849 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
COL9A1P20849 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.05■□□□□ 0.32
COL9A1P20849 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.05■□□□□ 0.32
COL9A1P20849 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.05■□□□□ 0.32
COL9A1P20849 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 RN7SL818P-201ENST00000485099 259 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms