Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC025678.2-201ENST00000562061 970 ntBASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 AL513210.1-201ENST00000629608 234 ntBASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC105339.1-204ENST00000636249 355 ntBASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC092902.6-201ENST00000641783 218 ntBASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 PCDHB17P-201ENST00000539533 2393 ntBASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TMX2-CTNND1H3BSU7 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC002056.1-201ENST00000395613 760 ntBASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 AL513480.1-201ENST00000451731 511 ntBASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 FAM86C2P-203ENST00000528684 1004 ntBASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms