Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIMD1Q9UGP4 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIMD1Q9UGP4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.46■□□□□ 0.38
LIMD1Q9UGP4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.46■□□□□ 0.38
LIMD1Q9UGP4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
LIMD1Q9UGP4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 AC139713.2-201ENST00000641328 2723 ntBASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMD1Q9UGP4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 AL353732.1-201ENST00000569618 1459 ntBASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 ARSEP1-201ENST00000420443 635 ntBASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 SLC25A6P5-201ENST00000435663 894 ntBASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 AL138918.1-201ENST00000568306 659 ntBASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 AC003101.2-201ENST00000612557 442 ntBASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMD1Q9UGP4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMD1Q9UGP4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms