Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CUEDC1Q9NWM3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 AL603756.1-201ENST00000606511 2163 ntBASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 DNAJB3-202ENST00000449667 1266 ntBASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 LINC00895-201ENST00000629028 1637 ntBASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
CUEDC1Q9NWM3 AL353732.1-201ENST00000569618 1459 ntBASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 AC131009.4-201ENST00000624048 1740 ntBASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 AC091167.2-201ENST00000579581 588 ntBASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 AC005412.3-201ENST00000580309 715 ntBASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 MIR4492-201ENST00000581627 80 ntBASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 MTDHP5-201ENST00000598980 586 ntBASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 AC006277.1-201ENST00000624348 1610 ntBASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
CUEDC1Q9NWM3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CUEDC1Q9NWM3 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CUEDC1Q9NWM3 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CUEDC1Q9NWM3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms