Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HDAC4P56524 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
HDAC4P56524 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 AL671710.1-201ENST00000610245 2349 ntBASIC17.53■□□□□ 0.4
HDAC4P56524 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.53■□□□□ 0.4
HDAC4P56524 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HDAC4P56524 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC4P56524 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC4P56524 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.53■□□□□ 0.4
HDAC4P56524 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC4P56524 RPL13AP23-201ENST00000480739 586 ntBASIC17.53■□□□□ 0.4
HDAC4P56524 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC4P56524 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC4P56524 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 BX640515.1-201ENST00000617215 977 ntBASIC17.53■□□□□ 0.4
HDAC4P56524 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HDAC4P56524 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC4P56524 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC4P56524 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HDAC4P56524 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC4P56524 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC4P56524 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HDAC4P56524 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC4P56524 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
HDAC4P56524 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.52■□□□□ 0.4
HDAC4P56524 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC4P56524 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC4P56524 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.52■□□□□ 0.4
HDAC4P56524 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
HDAC4P56524 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC4P56524 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.52■□□□□ 0.4
HDAC4P56524 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HDAC4P56524 CXCL1P1-201ENST00000502804 216 ntBASIC17.52■□□□□ 0.4
HDAC4P56524 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.52■□□□□ 0.4
HDAC4P56524 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC4P56524 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.52■□□□□ 0.4
HDAC4P56524 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HDAC4P56524 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.52■□□□□ 0.4
HDAC4P56524 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HDAC4P56524 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.52■□□□□ 0.4
HDAC4P56524 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.52■□□□□ 0.4
HDAC4P56524 AL139011.1-202ENST00000642063 584 ntBASIC17.52■□□□□ 0.4
HDAC4P56524 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.52■□□□□ 0.4
HDAC4P56524 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC4P56524 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.52■□□□□ 0.39
HDAC4P56524 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
HDAC4P56524 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
HDAC4P56524 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC4P56524 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.52■□□□□ 0.39
HDAC4P56524 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.52■□□□□ 0.39
HDAC4P56524 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.52■□□□□ 0.39
HDAC4P56524 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
HDAC4P56524 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC4P56524 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC4P56524 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC4P56524 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC4P56524 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC4P56524 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC4P56524 NFIC-211ENST00000641145 8399 ntBASIC17.51■□□□□ 0.39
HDAC4P56524 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HDAC4P56524 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.51■□□□□ 0.39
HDAC4P56524 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HDAC4P56524 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 CRYGEP-201ENST00000412192 528 ntBASIC17.51■□□□□ 0.39
HDAC4P56524 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.51■□□□□ 0.39
HDAC4P56524 AC006538.1-201ENST00000567905 1585 ntBASIC17.51■□□□□ 0.39
HDAC4P56524 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.51■□□□□ 0.39
HDAC4P56524 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.51■□□□□ 0.39
HDAC4P56524 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC4P56524 CYP2A7P1-201ENST00000595391 815 ntBASIC17.51■□□□□ 0.39
HDAC4P56524 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
HDAC4P56524 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.51■□□□□ 0.39
HDAC4P56524 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC4P56524 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC4P56524 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms