Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.99■□□□□ 0.79
BRCA1P38398 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
BRCA1P38398 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.99■□□□□ 0.79
BRCA1P38398 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
BRCA1P38398 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.99■□□□□ 0.79
BRCA1P38398 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.99■□□□□ 0.79
BRCA1P38398 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 AL138781.2-201ENST00000617896 1843 ntBASIC19.99■□□□□ 0.79
BRCA1P38398 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
BRCA1P38398 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.99■□□□□ 0.79
BRCA1P38398 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.99■□□□□ 0.79
BRCA1P38398 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.99■□□□□ 0.79
BRCA1P38398 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.99■□□□□ 0.79
BRCA1P38398 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.99■□□□□ 0.79
BRCA1P38398 AC106872.11-201ENST00000605838 421 ntBASIC19.99■□□□□ 0.79
BRCA1P38398 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
BRCA1P38398 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.98■□□□□ 0.79
BRCA1P38398 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
BRCA1P38398 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
BRCA1P38398 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.98■□□□□ 0.79
BRCA1P38398 INTS4P2-202ENST00000614726 2019 ntBASIC19.98■□□□□ 0.79
BRCA1P38398 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.98■□□□□ 0.79
BRCA1P38398 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.98■□□□□ 0.79
BRCA1P38398 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
BRCA1P38398 AC007969.1-201ENST00000433675 447 ntBASIC19.98■□□□□ 0.79
BRCA1P38398 AL355864.2-201ENST00000447420 863 ntBASIC19.98■□□□□ 0.79
BRCA1P38398 AC106760.1-201ENST00000508690 800 ntBASIC19.98■□□□□ 0.79
BRCA1P38398 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.98■□□□□ 0.79
BRCA1P38398 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 PTP4A1P2-201ENST00000546033 454 ntBASIC19.98■□□□□ 0.79
BRCA1P38398 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.98■□□□□ 0.79
BRCA1P38398 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.98■□□□□ 0.79
BRCA1P38398 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
BRCA1P38398 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
BRCA1P38398 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.98■□□□□ 0.79
BRCA1P38398 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.98■□□□□ 0.79
BRCA1P38398 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
BRCA1P38398 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BRCA1P38398 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.97■□□□□ 0.79
BRCA1P38398 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BRCA1P38398 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BRCA1P38398 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
BRCA1P38398 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BRCA1P38398 ACTG1P3-201ENST00000431775 1114 ntBASIC19.97■□□□□ 0.79
BRCA1P38398 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.97■□□□□ 0.79
BRCA1P38398 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.97■□□□□ 0.79
BRCA1P38398 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
BRCA1P38398 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.97■□□□□ 0.79
BRCA1P38398 AC105129.2-201ENST00000559536 390 ntBASIC19.97■□□□□ 0.79
BRCA1P38398 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.97■□□□□ 0.79
BRCA1P38398 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BRCA1P38398 AC010328.2-201ENST00000597698 1111 ntBASIC19.97■□□□□ 0.79
BRCA1P38398 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.97■□□□□ 0.79
BRCA1P38398 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.97■□□□□ 0.79
BRCA1P38398 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BRCA1P38398 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BRCA1P38398 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.97■□□□□ 0.79
BRCA1P38398 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.97■□□□□ 0.79
BRCA1P38398 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
BRCA1P38398 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.97■□□□□ 0.79
BRCA1P38398 CYP4F24P-201ENST00000586049 1580 ntBASIC19.97■□□□□ 0.79
BRCA1P38398 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
BRCA1P38398 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.96■□□□□ 0.79
BRCA1P38398 AL139010.1-201ENST00000454878 894 ntBASIC19.96■□□□□ 0.79
BRCA1P38398 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.96■□□□□ 0.79
BRCA1P38398 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 RHOXF1P1-202ENST00000635473 501 ntBASIC19.96■□□□□ 0.79
BRCA1P38398 AL136982.4-201ENST00000437689 1740 ntBASIC19.96■□□□□ 0.79
BRCA1P38398 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.96■□□□□ 0.79
BRCA1P38398 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.96■□□□□ 0.79
BRCA1P38398 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.96■□□□□ 0.79
BRCA1P38398 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC19.96■□□□□ 0.79
BRCA1P38398 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.96■□□□□ 0.79
BRCA1P38398 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms