Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH3P22223 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 AC023274.1-201ENST00000418278 595 ntBASIC16.49■□□□□ 0.23
CDH3P22223 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH3P22223 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH3P22223 HCG4B-203ENST00000450128 991 ntBASIC16.49■□□□□ 0.23
CDH3P22223 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH3P22223 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH3P22223 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH3P22223 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CDH3P22223 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH3P22223 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH3P22223 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CDH3P22223 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH3P22223 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH3P22223 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CDH3P22223 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH3P22223 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH3P22223 CROCCP2-202ENST00000412962 2773 ntBASIC16.49■□□□□ 0.23
CDH3P22223 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 PKD1P5-201ENST00000532415 10291 ntBASIC16.49■□□□□ 0.23
CDH3P22223 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CDH3P22223 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 AL136379.1-201ENST00000623471 2642 ntBASIC16.48■□□□□ 0.23
CDH3P22223 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 KRT18P2-201ENST00000447938 1258 ntBASIC16.48■□□□□ 0.23
CDH3P22223 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.48■□□□□ 0.23
CDH3P22223 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 AC002347.1-201ENST00000569543 541 ntBASIC16.48■□□□□ 0.23
CDH3P22223 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH3P22223 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
CDH3P22223 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CDH3P22223 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH3P22223 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH3P22223 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CDH3P22223 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH3P22223 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH3P22223 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.47■□□□□ 0.23
CDH3P22223 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH3P22223 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH3P22223 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
CDH3P22223 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH3P22223 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH3P22223 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.47■□□□□ 0.23
CDH3P22223 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH3P22223 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms