Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.85■□□□□ 0.13
COL5A1P20908 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL5A1P20908 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.85■□□□□ 0.13
COL5A1P20908 AC044860.1-202ENST00000559481 777 ntBASIC15.85■□□□□ 0.13
COL5A1P20908 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.85■□□□□ 0.13
COL5A1P20908 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.85■□□□□ 0.13
COL5A1P20908 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.85■□□□□ 0.13
COL5A1P20908 SRD5A3P1-201ENST00000603021 949 ntBASIC15.85■□□□□ 0.13
COL5A1P20908 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL5A1P20908 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL5A1P20908 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.85■□□□□ 0.13
COL5A1P20908 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
COL5A1P20908 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 SNX33P1-201ENST00000592116 1762 ntBASIC15.85■□□□□ 0.13
COL5A1P20908 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.85■□□□□ 0.13
COL5A1P20908 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 AC112492.5-201ENST00000421897 457 ntBASIC15.84■□□□□ 0.13
COL5A1P20908 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.84■□□□□ 0.13
COL5A1P20908 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.84■□□□□ 0.13
COL5A1P20908 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL5A1P20908 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL5A1P20908 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
COL5A1P20908 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.84■□□□□ 0.13
COL5A1P20908 KRT8P39-201ENST00000396270 1433 ntBASIC15.84■□□□□ 0.13
COL5A1P20908 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.84■□□□□ 0.13
COL5A1P20908 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
COL5A1P20908 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.84■□□□□ 0.13
COL5A1P20908 GNAQP1-201ENST00000444815 1067 ntBASIC15.84■□□□□ 0.13
COL5A1P20908 AC011495.1-201ENST00000498085 584 ntBASIC15.84■□□□□ 0.13
COL5A1P20908 DOC2GP-202ENST00000514950 1163 ntBASIC15.84■□□□□ 0.13
COL5A1P20908 TPRX2P-201ENST00000535362 881 ntBASIC15.84■□□□□ 0.13
COL5A1P20908 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.84■□□□□ 0.13
COL5A1P20908 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 AC092337.1-201ENST00000568699 1129 ntBASIC15.84■□□□□ 0.13
COL5A1P20908 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.84■□□□□ 0.13
COL5A1P20908 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL5A1P20908 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
COL5A1P20908 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
COL5A1P20908 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL5A1P20908 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.83■□□□□ 0.13
COL5A1P20908 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.13
COL5A1P20908 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
COL5A1P20908 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
COL5A1P20908 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL5A1P20908 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.83■□□□□ 0.12
COL5A1P20908 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.83■□□□□ 0.12
COL5A1P20908 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.83■□□□□ 0.12
COL5A1P20908 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL5A1P20908 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
COL5A1P20908 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.83■□□□□ 0.12
COL5A1P20908 RRP7BP-205ENST00000566851 833 ntBASIC15.83■□□□□ 0.12
COL5A1P20908 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.83■□□□□ 0.12
COL5A1P20908 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.83■□□□□ 0.12
COL5A1P20908 AC006277.1-201ENST00000624348 1610 ntBASIC15.83■□□□□ 0.12
COL5A1P20908 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.83■□□□□ 0.12
COL5A1P20908 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.83■□□□□ 0.12
COL5A1P20908 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL5A1P20908 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL5A1P20908 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.83■□□□□ 0.12
COL5A1P20908 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL5A1P20908 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
COL5A1P20908 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL5A1P20908 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL5A1P20908 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.83■□□□□ 0.12
COL5A1P20908 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.83■□□□□ 0.12
COL5A1P20908 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
COL5A1P20908 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
COL5A1P20908 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms