Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 TREML5P-201ENST00000421694 576 ntBASIC19.67■□□□□ 0.74
HLA-DOAP06340 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 IGHV3-42-201ENST00000520410 361 ntBASIC19.67■□□□□ 0.74
HLA-DOAP06340 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.67■□□□□ 0.74
HLA-DOAP06340 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 FO538757.1-201ENST00000623083 1397 ntBASIC19.67■□□□□ 0.74
HLA-DOAP06340 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 PPP6R2P1-201ENST00000450880 1275 ntBASIC19.66■□□□□ 0.74
HLA-DOAP06340 INGX-202ENST00000489074 768 ntBASIC19.66■□□□□ 0.74
HLA-DOAP06340 AC069120.2-201ENST00000524091 540 ntBASIC19.66■□□□□ 0.74
HLA-DOAP06340 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 RARRES2P9-201ENST00000565168 469 ntBASIC19.66■□□□□ 0.74
HLA-DOAP06340 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 AJ011932.1-201ENST00000621707 465 ntBASIC19.66■□□□□ 0.74
HLA-DOAP06340 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HLA-DOAP06340 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DOAP06340 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 MIR4453-201ENST00000584019 89 ntBASIC19.65■□□□□ 0.74
HLA-DOAP06340 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 AL158211.3-201ENST00000607385 239 ntBASIC19.65■□□□□ 0.74
HLA-DOAP06340 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.65■□□□□ 0.74
HLA-DOAP06340 OR6D1P-203ENST00000641209 4860 ntBASIC19.65■□□□□ 0.74
HLA-DOAP06340 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DOAP06340 AL391256.1-201ENST00000443260 1855 ntBASIC19.65■□□□□ 0.74
HLA-DOAP06340 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HLA-DOAP06340 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HLA-DOAP06340 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HLA-DOAP06340 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HLA-DOAP06340 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms