Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A1P02462 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
COL4A1P02462 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 RNF216P1-203ENST00000404404 2427 ntBASIC20.21■□□□□ 0.83
COL4A1P02462 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL4A1P02462 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A1P02462 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL4A1P02462 AC135586.1-201ENST00000539323 574 ntBASIC20.21■□□□□ 0.83
COL4A1P02462 NAA38-207ENST00000576861 556 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A1P02462 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A1P02462 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A1P02462 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A1P02462 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
COL4A1P02462 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC20.2■□□□□ 0.83
COL4A1P02462 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A1P02462 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A1P02462 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
COL4A1P02462 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL4A1P02462 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A1P02462 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL4A1P02462 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A1P02462 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
COL4A1P02462 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A1P02462 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.2■□□□□ 0.82
COL4A1P02462 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 AC244107.1-201ENST00000442033 332 ntBASIC20.2■□□□□ 0.82
COL4A1P02462 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A1P02462 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.2■□□□□ 0.82
COL4A1P02462 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A1P02462 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.2■□□□□ 0.82
COL4A1P02462 TP53TG3HP-202ENST00000569755 579 ntBASIC20.2■□□□□ 0.82
COL4A1P02462 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A1P02462 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL4A1P02462 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
COL4A1P02462 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A1P02462 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL4A1P02462 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A1P02462 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 GK-202ENST00000378941 458 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A1P02462 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A1P02462 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A1P02462 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A1P02462 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A1P02462 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
COL4A1P02462 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.19■□□□□ 0.82
COL4A1P02462 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A1P02462 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A1P02462 TMEM14DP-201ENST00000422205 345 ntBASIC20.19■□□□□ 0.82
COL4A1P02462 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A1P02462 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL4A1P02462 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.19■□□□□ 0.82
COL4A1P02462 AL023806.1-201ENST00000603994 1649 ntBASIC20.19■□□□□ 0.82
COL4A1P02462 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A1P02462 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A1P02462 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A1P02462 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A1P02462 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL4A1P02462 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
COL4A1P02462 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A1P02462 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A1P02462 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A1P02462 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A1P02462 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL4A1P02462 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL4A1P02462 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A1P02462 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms