Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
RTN3O95197 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.68■□□□□ 0.42
RTN3O95197 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 PCDH8P1-201ENST00000428983 2773 ntBASIC17.68■□□□□ 0.42
RTN3O95197 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.68■□□□□ 0.42
RTN3O95197 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.68■□□□□ 0.42
RTN3O95197 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 AC092183.1-201ENST00000469884 875 ntBASIC17.68■□□□□ 0.42
RTN3O95197 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.68■□□□□ 0.42
RTN3O95197 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
RTN3O95197 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.68■□□□□ 0.42
RTN3O95197 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RTN3O95197 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.68■□□□□ 0.42
RTN3O95197 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.68■□□□□ 0.42
RTN3O95197 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.67■□□□□ 0.42
RTN3O95197 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.67■□□□□ 0.42
RTN3O95197 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.67■□□□□ 0.42
RTN3O95197 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.67■□□□□ 0.42
RTN3O95197 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 AC092053.1-201ENST00000605787 1936 ntBASIC17.67■□□□□ 0.42
RTN3O95197 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
RTN3O95197 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
RTN3O95197 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.67■□□□□ 0.42
RTN3O95197 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.67■□□□□ 0.42
RTN3O95197 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.67■□□□□ 0.42
RTN3O95197 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.67■□□□□ 0.42
RTN3O95197 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.67■□□□□ 0.42
RTN3O95197 FAM86C2P-203ENST00000528684 1004 ntBASIC17.67■□□□□ 0.42
RTN3O95197 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.67■□□□□ 0.42
RTN3O95197 AL596442.2-201ENST00000610240 980 ntBASIC17.67■□□□□ 0.42
RTN3O95197 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
RTN3O95197 AL161645.1-201ENST00000622716 1255 ntBASIC17.67■□□□□ 0.42
RTN3O95197 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.67■□□□□ 0.42
RTN3O95197 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN3O95197 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.66■□□□□ 0.42
RTN3O95197 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.66■□□□□ 0.42
RTN3O95197 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.66■□□□□ 0.42
RTN3O95197 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 AC108860.2-201ENST00000562760 2183 ntBASIC17.66■□□□□ 0.42
RTN3O95197 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
RTN3O95197 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
RTN3O95197 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.66■□□□□ 0.42
RTN3O95197 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RTN3O95197 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.66■□□□□ 0.42
RTN3O95197 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.66■□□□□ 0.42
RTN3O95197 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.66■□□□□ 0.42
RTN3O95197 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
RTN3O95197 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.66■□□□□ 0.42
RTN3O95197 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.66■□□□□ 0.42
RTN3O95197 AP000344.2-201ENST00000512987 629 ntBASIC17.66■□□□□ 0.42
RTN3O95197 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.66■□□□□ 0.42
RTN3O95197 AC109635.5-201ENST00000533593 962 ntBASIC17.66■□□□□ 0.42
RTN3O95197 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RTN3O95197 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.66■□□□□ 0.42
RTN3O95197 MIR3909-201ENST00000579518 119 ntBASIC17.66■□□□□ 0.42
RTN3O95197 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.66■□□□□ 0.42
RTN3O95197 MIR4492-201ENST00000581627 80 ntBASIC17.66■□□□□ 0.42
RTN3O95197 AL009183.1-201ENST00000603760 355 ntBASIC17.66■□□□□ 0.42
RTN3O95197 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.66■□□□□ 0.42
RTN3O95197 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RTN3O95197 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
RTN3O95197 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RTN3O95197 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RTN3O95197 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RTN3O95197 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
RTN3O95197 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN3O95197 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN3O95197 AL121761.2-201ENST00000598007 1648 ntBASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms