Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS4BO75351 PCDH8P1-201ENST00000428983 2773 ntBASIC16.49■□□□□ 0.23
VPS4BO75351 DNAJB3-201ENST00000446806 729 ntBASIC16.49■□□□□ 0.23
VPS4BO75351 HLA-J-202ENST00000469281 1241 ntBASIC16.49■□□□□ 0.23
VPS4BO75351 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 AP001160.2-201ENST00000596071 487 ntBASIC16.49■□□□□ 0.23
VPS4BO75351 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS4BO75351 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS4BO75351 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 AL645728.1-201ENST00000366221 2101 ntBASIC16.49■□□□□ 0.23
VPS4BO75351 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS4BO75351 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS4BO75351 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS4BO75351 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS4BO75351 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS4BO75351 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
VPS4BO75351 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS4BO75351 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 AL356488.2-201ENST00000602755 427 ntBASIC16.48■□□□□ 0.23
VPS4BO75351 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.48■□□□□ 0.23
VPS4BO75351 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS4BO75351 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS4BO75351 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS4BO75351 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS4BO75351 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS4BO75351 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
VPS4BO75351 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.47■□□□□ 0.23
VPS4BO75351 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
VPS4BO75351 SIGLEC30P-201ENST00000455569 941 ntBASIC16.47■□□□□ 0.23
VPS4BO75351 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS4BO75351 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS4BO75351 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS4BO75351 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS4BO75351 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS4BO75351 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
VPS4BO75351 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
VPS4BO75351 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.47■□□□□ 0.23
VPS4BO75351 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS4BO75351 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms