Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MIR6069-201ENST00000620069 79 ntBASIC12.79□□□□□ -0.36
COL6A5A8TX70 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 AC068587.3-201ENST00000526613 355 ntBASIC12.79□□□□□ -0.36
COL6A5A8TX70 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 AC148477.9-201ENST00000623974 539 ntBASIC12.79□□□□□ -0.36
COL6A5A8TX70 RHOXF1P1-202ENST00000635473 501 ntBASIC12.79□□□□□ -0.36
COL6A5A8TX70 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.79□□□□□ -0.36
COL6A5A8TX70 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 MIR1227-201ENST00000408484 88 ntBASIC12.78□□□□□ -0.36
COL6A5A8TX70 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 CYP2A7P1-201ENST00000595391 815 ntBASIC12.78□□□□□ -0.36
COL6A5A8TX70 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 KRT18P66-201ENST00000452970 1269 ntBASIC12.78□□□□□ -0.36
COL6A5A8TX70 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 AC134698.3-201ENST00000523880 214 ntBASIC12.78□□□□□ -0.36
COL6A5A8TX70 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL6A5A8TX70 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
COL6A5A8TX70 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 UFM1-202ENST00000379649 846 ntTSL 4 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 STARD13-205ENST00000439831 945 ntTSL 2 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms