Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 AL133338.1-201ENST00000565695 1517 ntBASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 STOM-203ENST00000538954 1257 ntTSL 5 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 MIR4492-201ENST00000581627 80 ntBASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHROOM4Q9ULL8 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 LINC02012-201ENST00000608206 1725 ntBASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 LINC00895-201ENST00000629028 1637 ntBASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 MIR658-201ENST00000385210 100 ntBASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 AC004790.1-201ENST00000612686 536 ntBASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SHROOM4Q9ULL8 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.65
SHROOM4Q9ULL8 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.65
SHROOM4Q9ULL8 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC31.57■■■□□ 2.64
SHROOM4Q9ULL8 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 AL671710.1-201ENST00000610245 2349 ntBASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 AC022210.1-201ENST00000449856 793 ntBASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SHROOM4Q9ULL8 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 AC139713.2-201ENST00000641328 2723 ntBASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 GALT-202ENST00000450095 1280 ntTSL 2 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 AC104794.3-201ENST00000566840 1248 ntBASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 BANP-227ENST00000626016 2144 ntTSL 2 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 BTBD7P1-201ENST00000447253 1453 ntBASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
SHROOM4Q9ULL8 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 AC108860.2-201ENST00000562760 2183 ntBASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 DGCR5-201ENST00000399539 862 ntBASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 AL080243.2-201ENST00000418783 582 ntBASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
SHROOM4Q9ULL8 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms