Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HPS3Q969F9 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HPS3Q969F9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
HPS3Q969F9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HPS3Q969F9 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
HPS3Q969F9 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HPS3Q969F9 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HPS3Q969F9 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.6■□□□□ 0.57
HPS3Q969F9 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HPS3Q969F9 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HPS3Q969F9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HPS3Q969F9 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.59■□□□□ 0.57
HPS3Q969F9 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
HPS3Q969F9 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.59■□□□□ 0.57
HPS3Q969F9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HPS3Q969F9 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.59■□□□□ 0.57
HPS3Q969F9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.59■□□□□ 0.57
HPS3Q969F9 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.59■□□□□ 0.57
HPS3Q969F9 CYP2A7P1-201ENST00000595391 815 ntBASIC18.59■□□□□ 0.57
HPS3Q969F9 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.59■□□□□ 0.57
HPS3Q969F9 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.59■□□□□ 0.57
HPS3Q969F9 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
HPS3Q969F9 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.59■□□□□ 0.57
HPS3Q969F9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 AC006449.5-201ENST00000610658 2098 ntBASIC18.59■□□□□ 0.57
HPS3Q969F9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HPS3Q969F9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HPS3Q969F9 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.59■□□□□ 0.57
HPS3Q969F9 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
HPS3Q969F9 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HPS3Q969F9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
HPS3Q969F9 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
HPS3Q969F9 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.58■□□□□ 0.57
HPS3Q969F9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HPS3Q969F9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.58■□□□□ 0.57
HPS3Q969F9 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.58■□□□□ 0.57
HPS3Q969F9 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HPS3Q969F9 AC129492.6-201ENST00000611383 1305 ntBASIC18.58■□□□□ 0.57
HPS3Q969F9 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HPS3Q969F9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HPS3Q969F9 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HPS3Q969F9 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.58■□□□□ 0.56
HPS3Q969F9 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
HPS3Q969F9 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.58■□□□□ 0.56
HPS3Q969F9 AC093909.1-201ENST00000504731 1122 ntBASIC18.58■□□□□ 0.56
HPS3Q969F9 SLC25A1P1-201ENST00000528351 927 ntBASIC18.58■□□□□ 0.56
HPS3Q969F9 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.58■□□□□ 0.56
HPS3Q969F9 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
HPS3Q969F9 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.58■□□□□ 0.56
HPS3Q969F9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
HPS3Q969F9 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HPS3Q969F9 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
HPS3Q969F9 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.58■□□□□ 0.56
HPS3Q969F9 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HPS3Q969F9 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.58■□□□□ 0.56
HPS3Q969F9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HPS3Q969F9 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.58■□□□□ 0.56
HPS3Q969F9 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
HPS3Q969F9 AL353732.1-201ENST00000569618 1459 ntBASIC18.58■□□□□ 0.56
HPS3Q969F9 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HPS3Q969F9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
HPS3Q969F9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HPS3Q969F9 AC104109.2-201ENST00000602919 1418 ntBASIC18.57■□□□□ 0.56
HPS3Q969F9 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HPS3Q969F9 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
HPS3Q969F9 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HPS3Q969F9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HPS3Q969F9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HPS3Q969F9 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.57■□□□□ 0.56
HPS3Q969F9 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.57■□□□□ 0.56
HPS3Q969F9 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HPS3Q969F9 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.57■□□□□ 0.56
HPS3Q969F9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HPS3Q969F9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.57■□□□□ 0.56
HPS3Q969F9 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HPS3Q969F9 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HPS3Q969F9 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HPS3Q969F9 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.57■□□□□ 0.56
HPS3Q969F9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.57■□□□□ 0.56
HPS3Q969F9 VN2R19P-201ENST00000442399 1052 ntBASIC18.57■□□□□ 0.56
HPS3Q969F9 FAM185BP-201ENST00000443595 716 ntBASIC18.57■□□□□ 0.56
HPS3Q969F9 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HPS3Q969F9 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HPS3Q969F9 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.57■□□□□ 0.56
HPS3Q969F9 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.57■□□□□ 0.56
HPS3Q969F9 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.57■□□□□ 0.56
HPS3Q969F9 AC091167.2-201ENST00000579581 588 ntBASIC18.57■□□□□ 0.56
HPS3Q969F9 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms