Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 ARMC10P1-201ENST00000313754 855 ntBASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 AL139424.1-201ENST00000607572 797 ntBASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 AL356309.3-201ENST00000624132 1934 ntBASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4AQ8WYN0 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 MTDHP3-201ENST00000594186 672 ntBASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 AL139288.1-201ENST00000623748 933 ntBASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.42■□□□□ 0.38
ATG4AQ8WYN0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 SART3-203ENST00000546611 1184 ntBASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 GGT3P-204ENST00000453783 1664 ntBASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms