Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13CQ709C8 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13CQ709C8 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13CQ709C8 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13CQ709C8 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
VPS13CQ709C8 AC003101.2-201ENST00000612557 442 ntBASIC13.79□□□□□ -0.2
VPS13CQ709C8 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
VPS13CQ709C8 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13CQ709C8 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13CQ709C8 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13.79□□□□□ -0.2
VPS13CQ709C8 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13CQ709C8 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13CQ709C8 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 MTND6P24-201ENST00000440466 518 ntBASIC13.78□□□□□ -0.2
VPS13CQ709C8 AC234783.1-201ENST00000441761 496 ntBASIC13.78□□□□□ -0.2
VPS13CQ709C8 CSF2RBP1-201ENST00000447905 391 ntBASIC13.78□□□□□ -0.2
VPS13CQ709C8 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13CQ709C8 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13CQ709C8 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.77□□□□□ -0.2
VPS13CQ709C8 AC005332.8-201ENST00000622750 2735 ntBASIC13.77□□□□□ -0.2
VPS13CQ709C8 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.77□□□□□ -0.2
VPS13CQ709C8 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.77□□□□□ -0.2
VPS13CQ709C8 AC044860.1-202ENST00000559481 777 ntBASIC13.77□□□□□ -0.2
VPS13CQ709C8 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
VPS13CQ709C8 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
VPS13CQ709C8 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13CQ709C8 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC13.77□□□□□ -0.2
VPS13CQ709C8 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 CYP2A7P1-201ENST00000595391 815 ntBASIC13.77□□□□□ -0.21
VPS13CQ709C8 AC244093.1-201ENST00000610837 814 ntBASIC13.77□□□□□ -0.21
VPS13CQ709C8 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.77□□□□□ -0.21
VPS13CQ709C8 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 AC133963.1-201ENST00000504166 1679 ntBASIC13.77□□□□□ -0.21
VPS13CQ709C8 AC092171.3-201ENST00000610122 2651 ntBASIC13.77□□□□□ -0.21
VPS13CQ709C8 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.77□□□□□ -0.21
VPS13CQ709C8 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13CQ709C8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms