Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 AC008677.1-201ENST00000519230 1561 ntBASIC16.17■□□□□ 0.18
COL28A1Q2UY09 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 GPS2P2-201ENST00000430745 888 ntBASIC16.16■□□□□ 0.18
COL28A1Q2UY09 RPS2P32-201ENST00000439199 892 ntBASIC16.16■□□□□ 0.18
COL28A1Q2UY09 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 AC097493.3-201ENST00000509725 367 ntBASIC16.16■□□□□ 0.18
COL28A1Q2UY09 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL28A1Q2UY09 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AC069120.2-201ENST00000524091 540 ntBASIC16.15■□□□□ 0.18
COL28A1Q2UY09 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AC010336.2-201ENST00000564226 506 ntBASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AL132655.2-201ENST00000596276 594 ntBASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AC004233.3-201ENST00000607794 1269 ntBASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AC017083.2-201ENST00000608069 979 ntBASIC16.15■□□□□ 0.18
COL28A1Q2UY09 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
COL28A1Q2UY09 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL28A1Q2UY09 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL28A1Q2UY09 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.14■□□□□ 0.18
COL28A1Q2UY09 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms