Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 PCDHB17P-201ENST00000539533 2393 ntBASIC17.02■□□□□ 0.32
HADHAP40939 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.02■□□□□ 0.32
HADHAP40939 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.02■□□□□ 0.32
HADHAP40939 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.02■□□□□ 0.32
HADHAP40939 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.02■□□□□ 0.32
HADHAP40939 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
HADHAP40939 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.02■□□□□ 0.32
HADHAP40939 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
HADHAP40939 RPS15P9-201ENST00000494093 319 ntBASIC17.02■□□□□ 0.32
HADHAP40939 AC093909.1-201ENST00000504731 1122 ntBASIC17.02■□□□□ 0.32
HADHAP40939 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.02■□□□□ 0.32
HADHAP40939 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.02■□□□□ 0.32
HADHAP40939 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.02■□□□□ 0.32
HADHAP40939 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.02■□□□□ 0.32
HADHAP40939 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HADHAP40939 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.02■□□□□ 0.32
HADHAP40939 AL356488.2-201ENST00000602755 427 ntBASIC17.02■□□□□ 0.32
HADHAP40939 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 UBALD1-205ENST00000590891 2641 ntBASIC17.02■□□□□ 0.32
HADHAP40939 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HADHAP40939 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HADHAP40939 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
HADHAP40939 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
HADHAP40939 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.02■□□□□ 0.31
HADHAP40939 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.02■□□□□ 0.31
HADHAP40939 FLJ16779-201ENST00000612722 7638 ntBASIC17.02■□□□□ 0.31
HADHAP40939 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.02■□□□□ 0.31
HADHAP40939 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HADHAP40939 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.02■□□□□ 0.31
HADHAP40939 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.02■□□□□ 0.31
HADHAP40939 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HADHAP40939 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HADHAP40939 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HADHAP40939 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.01■□□□□ 0.31
HADHAP40939 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HADHAP40939 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 DOC2GP-204ENST00000639052 2548 ntBASIC17.01■□□□□ 0.31
HADHAP40939 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.01■□□□□ 0.31
HADHAP40939 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.01■□□□□ 0.31
HADHAP40939 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 AL031284.1-201ENST00000419297 478 ntBASIC17.01■□□□□ 0.31
HADHAP40939 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.01■□□□□ 0.31
HADHAP40939 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HADHAP40939 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.01■□□□□ 0.31
HADHAP40939 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HADHAP40939 AC005593.1-201ENST00000624894 515 ntBASIC17.01■□□□□ 0.31
HADHAP40939 FAM215A-202ENST00000632077 792 ntBASIC17.01■□□□□ 0.31
HADHAP40939 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.01■□□□□ 0.31
HADHAP40939 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.01■□□□□ 0.31
HADHAP40939 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HADHAP40939 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HADHAP40939 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
HADHAP40939 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.01■□□□□ 0.31
HADHAP40939 CYP2T1P-202ENST00000641596 2535 ntBASIC17.01■□□□□ 0.31
HADHAP40939 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HADHAP40939 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.01■□□□□ 0.31
HADHAP40939 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.01■□□□□ 0.31
HADHAP40939 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HADHAP40939 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HADHAP40939 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HADHAP40939 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
HADHAP40939 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HADHAP40939 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HADHAP40939 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
HADHAP40939 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17■□□□□ 0.31
HADHAP40939 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17■□□□□ 0.31
HADHAP40939 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17■□□□□ 0.31
HADHAP40939 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17■□□□□ 0.31
HADHAP40939 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms