Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.66■□□□□ 0.42
BDNFP23560 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
BDNFP23560 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 AC005915.1-201ENST00000624912 2018 ntBASIC17.66■□□□□ 0.42
BDNFP23560 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
BDNFP23560 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.66■□□□□ 0.42
BDNFP23560 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.66■□□□□ 0.42
BDNFP23560 METTL21AP1-201ENST00000438852 635 ntBASIC17.66■□□□□ 0.42
BDNFP23560 AC079140.1-201ENST00000508039 487 ntBASIC17.66■□□□□ 0.42
BDNFP23560 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.66■□□□□ 0.42
BDNFP23560 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.66■□□□□ 0.42
BDNFP23560 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.66■□□□□ 0.42
BDNFP23560 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.66■□□□□ 0.42
BDNFP23560 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.66■□□□□ 0.42
BDNFP23560 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 AKAP8P1-201ENST00000434743 1349 ntBASIC17.66■□□□□ 0.42
BDNFP23560 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
BDNFP23560 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
BDNFP23560 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
BDNFP23560 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BDNFP23560 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.66■□□□□ 0.42
BDNFP23560 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
BDNFP23560 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
BDNFP23560 WASH6P-202ENST00000359512 1437 ntBASIC17.65■□□□□ 0.42
BDNFP23560 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 PMS2P2-201ENST00000425039 1128 ntBASIC17.65■□□□□ 0.42
BDNFP23560 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 RN7SL589P-201ENST00000481268 310 ntBASIC17.65■□□□□ 0.42
BDNFP23560 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.65■□□□□ 0.42
BDNFP23560 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
BDNFP23560 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
BDNFP23560 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
BDNFP23560 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
BDNFP23560 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
BDNFP23560 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
BDNFP23560 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.42
BDNFP23560 AC016027.1-202ENST00000607927 1699 ntBASIC17.64■□□□□ 0.42
BDNFP23560 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.64■□□□□ 0.42
BDNFP23560 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 SNX33P1-201ENST00000592116 1762 ntBASIC17.64■□□□□ 0.41
BDNFP23560 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 AL592309.1-201ENST00000443127 649 ntBASIC17.64■□□□□ 0.41
BDNFP23560 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.64■□□□□ 0.41
BDNFP23560 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.64■□□□□ 0.41
BDNFP23560 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.64■□□□□ 0.41
BDNFP23560 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.64■□□□□ 0.41
BDNFP23560 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.64■□□□□ 0.41
BDNFP23560 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.64■□□□□ 0.41
BDNFP23560 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms