Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 AL031432.2-201ENST00000566714 459 ntBASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 AL928711.1-201ENST00000570165 459 ntBASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 MIR3197-201ENST00000582241 73 ntBASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC004835.2-201ENST00000603762 682 ntBASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.56■□□□□ 0.24
TMX2-CTNND1H3BSU7 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 OR7E47P-204ENST00000575924 449 ntBASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TMX2-CTNND1H3BSU7 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC068137.2-201ENST00000605408 478 ntBASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TMX2-CTNND1H3BSU7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 AL590787.1-201ENST00000568856 1315 ntBASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 MST1L-201ENST00000442552 2185 ntBASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms