Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 OR7E14P-202ENST00000530490 1290 ntBASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 AC025062.2-201ENST00000605477 670 ntBASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 PCDH8P1-201ENST00000428983 2773 ntBASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 AC046158.3-201ENST00000624947 2558 ntBASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 RPS2P28-201ENST00000314255 741 ntBASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 AC004870.1-201ENST00000315132 882 ntBASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 UNC93B7-201ENST00000509439 705 ntBASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 AL121912.1-201ENST00000603683 238 ntBASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 PI4KAP1-204ENST00000612579 1703 ntBASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 KRT8P49-201ENST00000604166 1432 ntBASIC16.62■□□□□ 0.25
TRIM54Q9BYV2 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 FAM197Y8-203ENST00000450145 560 ntBASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 EMBP1-201ENST00000458200 901 ntBASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 AF186996.4-201ENST00000467186 377 ntBASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 RNPS1P1-201ENST00000507437 918 ntBASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM54Q9BYV2 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms