Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
NUP88Q99567 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
NUP88Q99567 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
NUP88Q99567 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NUP88Q99567 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NUP88Q99567 OR6D1P-203ENST00000641209 4860 ntBASIC19.64■□□□□ 0.74
NUP88Q99567 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NUP88Q99567 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NUP88Q99567 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.64■□□□□ 0.74
NUP88Q99567 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
NUP88Q99567 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
NUP88Q99567 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.64■□□□□ 0.73
NUP88Q99567 AL645939.2-201ENST00000427340 991 ntBASIC19.64■□□□□ 0.73
NUP88Q99567 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.64■□□□□ 0.73
NUP88Q99567 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
NUP88Q99567 AC109322.1-201ENST00000524499 1264 ntBASIC19.64■□□□□ 0.73
NUP88Q99567 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.64■□□□□ 0.73
NUP88Q99567 AC026120.1-201ENST00000611536 926 ntBASIC19.64■□□□□ 0.73
NUP88Q99567 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
NUP88Q99567 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.64■□□□□ 0.73
NUP88Q99567 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.64■□□□□ 0.73
NUP88Q99567 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.64■□□□□ 0.73
NUP88Q99567 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 AC092053.1-201ENST00000605787 1936 ntBASIC19.64■□□□□ 0.73
NUP88Q99567 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NUP88Q99567 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
NUP88Q99567 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NUP88Q99567 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.63■□□□□ 0.73
NUP88Q99567 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.63■□□□□ 0.73
NUP88Q99567 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP88Q99567 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP88Q99567 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
NUP88Q99567 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP88Q99567 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP88Q99567 AL353732.1-201ENST00000569618 1459 ntBASIC19.63■□□□□ 0.73
NUP88Q99567 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 TOP3BP1-201ENST00000420768 1380 ntBASIC19.63■□□□□ 0.73
NUP88Q99567 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.63■□□□□ 0.73
NUP88Q99567 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
NUP88Q99567 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.63■□□□□ 0.73
NUP88Q99567 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP88Q99567 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.63■□□□□ 0.73
NUP88Q99567 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.63■□□□□ 0.73
NUP88Q99567 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NUP88Q99567 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NUP88Q99567 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
NUP88Q99567 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
NUP88Q99567 SPDYE11-202ENST00000450699 704 ntBASIC19.62■□□□□ 0.73
NUP88Q99567 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.62■□□□□ 0.73
NUP88Q99567 AC079140.1-201ENST00000508039 487 ntBASIC19.62■□□□□ 0.73
NUP88Q99567 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.62■□□□□ 0.73
NUP88Q99567 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms