Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.13■□□□□ 0.65
ERCC4Q92889 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
ERCC4Q92889 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.13■□□□□ 0.65
ERCC4Q92889 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.13■□□□□ 0.65
ERCC4Q92889 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.13■□□□□ 0.65
ERCC4Q92889 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.13■□□□□ 0.65
ERCC4Q92889 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.13■□□□□ 0.65
ERCC4Q92889 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.13■□□□□ 0.65
ERCC4Q92889 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.13■□□□□ 0.65
ERCC4Q92889 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.13■□□□□ 0.65
ERCC4Q92889 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.13■□□□□ 0.65
ERCC4Q92889 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 AC092119.3-201ENST00000612618 583 ntBASIC19.13■□□□□ 0.65
ERCC4Q92889 NPAP1P7-201ENST00000613027 823 ntBASIC19.13■□□□□ 0.65
ERCC4Q92889 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.13■□□□□ 0.65
ERCC4Q92889 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.13■□□□□ 0.65
ERCC4Q92889 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ERCC4Q92889 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
ERCC4Q92889 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
ERCC4Q92889 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.12■□□□□ 0.65
ERCC4Q92889 AC007950.2-201ENST00000615045 2347 ntBASIC19.12■□□□□ 0.65
ERCC4Q92889 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
ERCC4Q92889 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC4Q92889 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.12■□□□□ 0.65
ERCC4Q92889 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
ERCC4Q92889 SIGLEC30P-201ENST00000455569 941 ntBASIC19.12■□□□□ 0.65
ERCC4Q92889 AC099336.1-202ENST00000602961 463 ntBASIC19.12■□□□□ 0.65
ERCC4Q92889 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
ERCC4Q92889 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ERCC4Q92889 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
ERCC4Q92889 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.12■□□□□ 0.65
ERCC4Q92889 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.12■□□□□ 0.65
ERCC4Q92889 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ERCC4Q92889 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC4Q92889 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.11■□□□□ 0.65
ERCC4Q92889 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 NUS1P2-201ENST00000417358 873 ntBASIC19.11■□□□□ 0.65
ERCC4Q92889 LINC00982-205ENST00000420957 435 ntBASIC19.11■□□□□ 0.65
ERCC4Q92889 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC4Q92889 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC4Q92889 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
ERCC4Q92889 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.11■□□□□ 0.65
ERCC4Q92889 AL358472.4-201ENST00000633140 710 ntBASIC19.11■□□□□ 0.65
ERCC4Q92889 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.11■□□□□ 0.65
ERCC4Q92889 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
ERCC4Q92889 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.11■□□□□ 0.65
ERCC4Q92889 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ERCC4Q92889 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ERCC4Q92889 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ERCC4Q92889 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
ERCC4Q92889 CYP2T1P-202ENST00000641596 2535 ntBASIC19.11■□□□□ 0.65
ERCC4Q92889 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms