Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.58■□□□□ 0.25
SRP54P61011 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.58■□□□□ 0.25
SRP54P61011 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
SRP54P61011 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.58■□□□□ 0.24
SRP54P61011 TSEN15P1-201ENST00000423257 515 ntBASIC16.58■□□□□ 0.24
SRP54P61011 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.58■□□□□ 0.24
SRP54P61011 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.58■□□□□ 0.24
SRP54P61011 AL009183.1-201ENST00000603760 355 ntBASIC16.58■□□□□ 0.24
SRP54P61011 AL355385.1-201ENST00000606123 409 ntBASIC16.58■□□□□ 0.24
SRP54P61011 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SRP54P61011 AP001350.2-201ENST00000625104 1094 ntBASIC16.58■□□□□ 0.24
SRP54P61011 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.58■□□□□ 0.24
SRP54P61011 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.58■□□□□ 0.24
SRP54P61011 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.58■□□□□ 0.24
SRP54P61011 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.58■□□□□ 0.24
SRP54P61011 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.58■□□□□ 0.24
SRP54P61011 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.58■□□□□ 0.24
SRP54P61011 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SRP54P61011 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SRP54P61011 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SRP54P61011 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SRP54P61011 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
SRP54P61011 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 LINC02012-201ENST00000608206 1725 ntBASIC16.57■□□□□ 0.24
SRP54P61011 KRT8P49-201ENST00000604166 1432 ntBASIC16.57■□□□□ 0.24
SRP54P61011 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SRP54P61011 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.57■□□□□ 0.24
SRP54P61011 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 TFAMP1-201ENST00000412727 736 ntBASIC16.57■□□□□ 0.24
SRP54P61011 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.57■□□□□ 0.24
SRP54P61011 AL645939.2-201ENST00000427340 991 ntBASIC16.57■□□□□ 0.24
SRP54P61011 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.57■□□□□ 0.24
SRP54P61011 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SRP54P61011 KRT8P48-201ENST00000515599 1220 ntBASIC16.57■□□□□ 0.24
SRP54P61011 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.57■□□□□ 0.24
SRP54P61011 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
SRP54P61011 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SRP54P61011 AC087641.1-201ENST00000557561 1021 ntBASIC16.57■□□□□ 0.24
SRP54P61011 MPDU1-223ENST00000582151 728 ntBASIC16.57■□□□□ 0.24
SRP54P61011 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.57■□□□□ 0.24
SRP54P61011 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.57■□□□□ 0.24
SRP54P61011 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.57■□□□□ 0.24
SRP54P61011 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SRP54P61011 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.57■□□□□ 0.24
SRP54P61011 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SRP54P61011 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.56■□□□□ 0.24
SRP54P61011 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.56■□□□□ 0.24
SRP54P61011 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.56■□□□□ 0.24
SRP54P61011 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.56■□□□□ 0.24
SRP54P61011 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SRP54P61011 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.56■□□□□ 0.24
SRP54P61011 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.56■□□□□ 0.24
SRP54P61011 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.56■□□□□ 0.24
SRP54P61011 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.56■□□□□ 0.24
SRP54P61011 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.56■□□□□ 0.24
SRP54P61011 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 RN7SL589P-201ENST00000481268 310 ntBASIC16.56■□□□□ 0.24
SRP54P61011 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.56■□□□□ 0.24
SRP54P61011 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.56■□□□□ 0.24
SRP54P61011 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SRP54P61011 RARRES2P8-201ENST00000566335 367 ntBASIC16.56■□□□□ 0.24
SRP54P61011 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.56■□□□□ 0.24
SRP54P61011 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.56■□□□□ 0.24
SRP54P61011 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.56■□□□□ 0.24
SRP54P61011 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 AC131009.4-201ENST00000624048 1740 ntBASIC16.56■□□□□ 0.24
SRP54P61011 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SRP54P61011 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SRP54P61011 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
SRP54P61011 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SRP54P61011 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms