Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIM2P55344 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIM2P55344 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.96■□□□□ 0.15
LIM2P55344 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIM2P55344 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIM2P55344 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
LIM2P55344 AL022342.1-201ENST00000400363 863 ntBASIC15.96■□□□□ 0.15
LIM2P55344 AC007967.2-201ENST00000432613 625 ntBASIC15.96■□□□□ 0.15
LIM2P55344 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.96■□□□□ 0.15
LIM2P55344 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LIM2P55344 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.96■□□□□ 0.15
LIM2P55344 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.96■□□□□ 0.15
LIM2P55344 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.96■□□□□ 0.15
LIM2P55344 AC005412.3-201ENST00000580309 715 ntBASIC15.96■□□□□ 0.15
LIM2P55344 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.96■□□□□ 0.15
LIM2P55344 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.96■□□□□ 0.15
LIM2P55344 AC064836.3-201ENST00000607928 673 ntBASIC15.96■□□□□ 0.15
LIM2P55344 ACTL9-202ENST00000612068 1252 ntBASIC15.96■□□□□ 0.15
LIM2P55344 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.96■□□□□ 0.15
LIM2P55344 LINC00895-201ENST00000629028 1637 ntBASIC15.96■□□□□ 0.15
LIM2P55344 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
LIM2P55344 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIM2P55344 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIM2P55344 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.96■□□□□ 0.15
LIM2P55344 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
LIM2P55344 AL353732.1-201ENST00000569618 1459 ntBASIC15.96■□□□□ 0.14
LIM2P55344 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.95■□□□□ 0.14
LIM2P55344 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.95■□□□□ 0.14
LIM2P55344 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.95■□□□□ 0.14
LIM2P55344 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
LIM2P55344 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.95■□□□□ 0.14
LIM2P55344 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 PMS2P1-201ENST00000431037 1228 ntBASIC15.95■□□□□ 0.14
LIM2P55344 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.95■□□□□ 0.14
LIM2P55344 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.95■□□□□ 0.14
LIM2P55344 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.95■□□□□ 0.14
LIM2P55344 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.95■□□□□ 0.14
LIM2P55344 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 AC091167.2-201ENST00000579581 588 ntBASIC15.95■□□□□ 0.14
LIM2P55344 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
LIM2P55344 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 SLC22A20-204ENST00000530038 1673 ntBASIC15.95■□□□□ 0.14
LIM2P55344 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
LIM2P55344 AL391256.1-201ENST00000443260 1855 ntBASIC15.95■□□□□ 0.14
LIM2P55344 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIM2P55344 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.94■□□□□ 0.14
LIM2P55344 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
LIM2P55344 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.94■□□□□ 0.14
LIM2P55344 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.94■□□□□ 0.14
LIM2P55344 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.94■□□□□ 0.14
LIM2P55344 AC006277.1-201ENST00000624348 1610 ntBASIC15.94■□□□□ 0.14
LIM2P55344 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIM2P55344 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
LIM2P55344 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
LIM2P55344 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
LIM2P55344 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.94■□□□□ 0.14
LIM2P55344 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.94■□□□□ 0.14
LIM2P55344 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.94■□□□□ 0.14
LIM2P55344 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
LIM2P55344 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.94■□□□□ 0.14
LIM2P55344 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.94■□□□□ 0.14
LIM2P55344 AC013467.2-201ENST00000605472 835 ntBASIC15.94■□□□□ 0.14
LIM2P55344 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms