Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 AL512652.2-201ENST00000625156 1716 ntBASIC19.84■□□□□ 0.77
LIMCH1Q9UPQ0 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 AC025062.2-201ENST00000605477 670 ntBASIC19.83■□□□□ 0.77
LIMCH1Q9UPQ0 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 GGT3P-204ENST00000453783 1664 ntBASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 AC006504.4-201ENST00000592118 1568 ntBASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 MTHFR-217ENST00000641820 1569 ntBASIC19.83■□□□□ 0.76
LIMCH1Q9UPQ0 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 PI4KAP1-204ENST00000612579 1703 ntBASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 AKR1C7P-201ENST00000305623 895 ntBASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMCH1Q9UPQ0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 AC021087.4-201ENST00000563761 564 ntBASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 PRELID1P1-202ENST00000567272 903 ntBASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMCH1Q9UPQ0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms